Bioinformatic pipeline

終了済み 投稿 3年前 着払い
終了済み 着払い

Hi, I'm looking to code a bioinformatic pipeline including:

- Downloading data from SRA, ENA, JGI, and NCBI

- Four main steps: (1) matching SRA sample to genomes using package Mash, (2) QC preprocessing SRA samples using software FastqPuri (3) Quantifying abundance against matching genome using software kallisto or STAR alternatevely (4) Generating orthology (one-to-one) relationship of genes across all genomes using OrthoFinder2

-One step for result consolidation into a count table

The main task is chaining output from one tool as input for the next.

Please provide me with a quote.

Thanks in advance

Python

プロジェクトID: #26495040

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5個の提案 リモートプロジェクト アクティブ 3年前

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NovaSofts

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PKonstiantyn

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suyashdhoot

Hi I am a very experienced biostatistician, bioinformatics data scientist and academic writer. I have completed several PhD level thesis projects involving advanced statistical analysis of data. I have worked with data もっと

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mzdesmag

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vicky5258

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